This is a (far from comprehensive) list of resources that I find useful. This list is mostly here to serve as a place to keep references for myself, but maybe others will benefit from it too!

Data Science/Statistics

Books

• R for Data Science
• Advanced R
• R packages

R Packages

• tidyverse
• rmarkdown
• shiny
• shinyjs
• shinyalert
• reprex

Blogs

• R-bloggers
• RStudio blog
• Business Science
• From the bottom of the heap
• Variance Explained
• Econometrics and Free Software
• Shirin’s Playground
• Dean Attali

Blog Posts

• Writing your thesis with bookdown

Unix/RStudio Connect

Books/Docs

• Unix Workbench
• RStudio Connect Admin Guide
• Ubuntu Server Guide
• nginx Beginner’s Guide

Blog Posts

• How to Set Up Shiny Server on Ubuntu 16.04
• Understanding Symbolic Links

Stack Overflow/Ask Ubuntu

• Configure Proxies

Environmental Engineering

R Packages

• dataRetrieval
• USGS-R

Blogs

• Charles Haas’ Blog
• The Sales Laboratory
• Jacob Price

Biology/Bioinformatics

Books

• Modern Statistics for Modern Biology

R Packages

• ggtree
• treeio
• tidytree
• dada2
• phyloseq
• rBLAST

Blogs

• The Molecular Ecologist